文章摘要
臧能玮1,2,朱爱意 1,陈丕茂 2,袁华荣 2,张红会 1,2,魏文迪 2,3.基于 eDNA 技术的珠海外伶仃海洋牧场细菌多样性研究[J].广东农业科学,2023,50(2):67-75
查看全文    HTML 基于 eDNA 技术的珠海外伶仃海洋牧场细菌多样性研究
Research on Bacteria Diversity of Marine Ranch in Zhuhai Wailingding Based on eDNA Technology
  
DOI:10.16768/j.issn.1004-874X.2023.02.008
中文关键词: eDNA  海洋牧场  多样性  PCR 扩增  微生物  优势度
英文关键词: eDNA  marine ranch  diversity  PCR amplification  microoganism  dominance
基金项目:广东省重点领域研发计划项目(2020B1111030002);中国水产科学研究院南海水产研究所基本科研业务费专项(2021SD02);中国水产科学研究院基本科研业务费专项(2020TD06)
作者单位
臧能玮1,2,朱爱意 1,陈丕茂 2,袁华荣 2,张红会 1,2,魏文迪 2,3 1. 浙江海洋大学国家海洋设施养殖工程技术研究中心浙江 舟山 3160222. 中国水产科学院南海水产科学研究所广东 广州 5103003. 上海海洋大学海洋科学学院上海 201306 
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中文摘要:
      【目的】探索珠海外伶仃海洋牧场微生物群落组成、序列数、生物多样性等,分析 eDNA 技术的灵敏度,为珠海外伶仃海洋牧场生态系统管理维护提供参考。【方法】2021 年 9 月在珠海外伶仃海洋牧场设立 9 个站位点,在表层水下 2 m 处采样,并对样品进行预处理、DNA 提取、PCR 扩增、高通量测序,分析微生物种类组成、微生物资源密度和丰度,确定优势种。【结果】通过 eDNA 技术共检出珠海外伶仃海洋牧场微生物 30 种,隶属于 5 门 7 纲 14 目 19 科 26 属,共检测出 779 706 个 OTU(Operational Taxonomic Units)。变形菌门为绝对优势门(占 75.06%),其次分别是拟杆菌门(占 11.35%)、厚壁菌门(占 5.28%)、浮霉菌门(占 1.91%)、放线菌门(占 1.06%);优势种共有 7 种,分别是交替假单胞菌、海杆菌、莫拉克氏菌、嗜冷菌、溶藻弧菌、嗜盐单胞菌、鞘氨醇杆菌,其中溶藻弧菌优势度最高(0.19)、为绝对优势种,其次是交替假单胞菌和莫拉克氏菌,优势度分别达到 0.13、0.12,为主要优势种。【结论】研究结果揭示了珠海外伶仃海洋牧场的微生物群落信息,探索了 eDNA 技术在海洋牧场的应用,印证了该技术的高效性和灵敏度,为海洋牧场微生物方面的研究提供基础数据和科学参考。
英文摘要:
      【Objective】The study aims to explore the composition, sequence number and diversity of microbial community in Zhuhai Wailingding Marine Ranch, analyze the sensitivity and reducing power of eDNA technology, with a view to providing references for the management and maintenance of ecosystem in Zhuhai Wailingding Marine Ranch. 【Method】In September 2021, 9 stations were set up in Zhuhai Wailingding Marine Ranch to sample at 2 m below the surface water for pretreatment, DNA extraction, PCR amplification, and high-throughput sequencing to analyze the composition of microbial species, the density and abundance of microbial resources, and determine the dominant species.【Result】A total of 30 species of microorganisms in Zhuhai Wailingding Marine Ranch were detected by eDNA technology, and 5 phyla, 7 classes, 14 orders, 19 families and 26 genera were identified, and a total of 779 706 Operational Taxonomic Units (OTUS) were detected. The Proteobacteria was the absolute dominant phylum accounting for 75.06%, followed by Bacteroidetes (11.35%), Firmicutes (5.28%), Planctomycetes (1.91%), and Actinobacteria (1.06%). There were 7 dominant species, which were Pseudoalteromonas, Marinobacter, Moraxella, Psychrobacter, Vibrio alginolyticus, Halomonas and Sphingobacterium. The dominance of Vibrio alginolyticus reached 0.19, which was the absolute dominant species, followed by Moraxella and Pseudoalteromonas reaching 0.134 and 0.127, respectively, which were the main dominant species.【Conclusion】The study reveals the microbial community information of the Zhuhai Wailingding Marine Ranch, explores the application of eDNA technology in marine ranch, and verifies the efficiency and sensitivity of this technology, providing basic data and scientific reference for future research on marine ranching microorganisms.
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